\documentclass[a4paper]{book}
\usepackage{a4wide}
\usepackage{makeidx}
\usepackage{fancyhdr}
\usepackage{graphicx}
\usepackage{multicol}
\usepackage{float}
\usepackage{textcomp}
\usepackage{alltt}
\usepackage{times}
\usepackage{ifpdf}
\ifpdf
\usepackage[pdftex,
            pagebackref=true,
            colorlinks=true,
            linkcolor=blue,
            unicode
           ]{hyperref}
\else
\usepackage[ps2pdf,
            pagebackref=true,
            colorlinks=true,
            linkcolor=blue,
            unicode
           ]{hyperref}
\usepackage{pspicture}
\fi
\usepackage[utf8]{inputenc}
\usepackage{doxygen}
\makeindex
\setcounter{tocdepth}{3}
\renewcommand{\footrulewidth}{0.4pt}
\begin{document}
\begin{titlepage}
\vspace*{7cm}
\begin{center}
{\Large PhGA }\\
\vspace*{1cm}
{\large Generated by Doxygen 1.5.8}\\
\vspace*{0.5cm}
{\small Tue Feb 2 13:38:03 2010}\\
\end{center}
\end{titlepage}
\clearemptydoublepage
\pagenumbering{roman}
\tableofcontents
\clearemptydoublepage
\pagenumbering{arabic}
\chapter{Class Index}
\input{annotated}
\chapter{File Index}
\input{files}
\chapter{Class Documentation}
\input{struct__entry}
\include{class_chaining___hash}
\include{class_graph___node}
\include{classphga}
\include{classrandom_g}
\chapter{File Documentation}
\input{_chaining___hash_8cpp}
\include{_graph___node_8cpp}
\include{_graph___node_8h}
\include{neighbor__joining_2main_8cpp}
\include{phga_2main_8cpp}
\include{neighbor__joining_8cpp}
\include{neighbor__joining_8h}
\include{phga_8cpp}
\include{phga_8h}
\include{random_8cpp}
\include{random_8hpp}
\include{useful__math_8cpp}
\include{useful__math_8h}
\include{useful__utils_8h}
\printindex
\end{document}
